Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs56408868 chr9:38003124 G/T 0 507 22.6 22.87 2.47 KM Plot
LGG rs56661558 chr2:74386947 C/T 2.4E-5 501 21.83 24.23 11.57 KM Plot
LGG rs57230497 chr5:157016313 A/G 3.73E-6 488 21.78 24.07 8.03 KM Plot
LGG rs57336333 chr6:53115190 T/C 1.31E-5 509 22.12 24.53 14.8 KM Plot
LGG rs57461315 chr14:24411851 A/G 4.06E-5 508 23.58 21.15 16.63 KM Plot
LGG rs57901513 chr14:24410417 A/G 3.54E-5 504 23.58 21.45 16.63 KM Plot
LGG rs57962361 chr19:19425025 C/T 8.27E-6 505 21.77 26.33 12.4 KM Plot
LGG rs57978986 chr14:24412217 C/A 4.06E-5 508 23.58 21.15 16.63 KM Plot
LGG rs58283294 chr9:133352554 G/A 1.98E-5 498 23.12 21.57 14.98 KM Plot
LGG rs58469981 chr14:24413419 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs58542926 chr19:19379549 C/T 2.02E-5 507 21.7 26.17 15.05 KM Plot
LGG rs58740312 chr3:194787937 A/AATT 3.83E-6 501 21.6 26.03 5.17 KM Plot
LGG rs5876314 chr6:53193562 TA/T 4.99E-5 509 13.7 23.33 22.47 KM Plot
LGG rs58786866 chr14:24414625 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs58909995 chr14:24412383 C/A 4.06E-5 508 23.58 21.15 16.63 KM Plot